List of Workshop Oral Presentations
Oral list at Mon Sep 22 10:01:04 2008
| Oral/Poster No. | Presenting Author | Title |
|---|---|---|
| 1. Bioinformatics and Statistical Genomics | ||
| 1/8 | A J Brookes (United Kingdom) | GEN2PHEN: An International Effort To Harmonise And Optimise The Databasing Of Gene-Disease Relationships |
| 2/38 | Akhilesh Pandey (India) | Genome annotation of Anopheles gambiae mosquito using tandem mass spectrometry-derived data |
| 3/34 | Srinivasan Narayanaswamy (India) | Prediction of protein-protein interactions between a malarial parasite and human |
| 4/27 | M Madan Babu (United Kingdom) | Expression divergence during human evolution is shaped by change in genomic neighbourhood of genes |
| 5/10 | Nagasuma Chandra (India) | Flow of information in the M.tuberculosis interactome network: Pathways to drug resistance |
| 6/2 | Vishal Acharya (India) | Prediction of deleterious Human Membrane Transporter Polymorphisms |
| 7/16 | Saurabh Ghosh (India) | A Novel Transmission Disequilibrium Test For Quantitative Traits |
| 2. Single Gene Disorders | ||
| 8/101 | Yoni Sheynin (Israel) | Study of the Gene Causing Congenital Insensitivity to Pain among Israeli-Beduins |
| 9/91 | Nadejda Maksimova (Russia) | Novel CUL7 mutation in 49 Yakut patients with short stature syndrome |
| 10/87 | Arun Kumar (India) | Molecular genetics of primary microcephaly in Indian families |
| 11/76 | Muhammad Ansar (Pakistan) | CC2D1A is involved in autosomal recessive non-syndromic mental retardation in a Pakistani Family |
| 12/104 | Achal Srivastava (India) | Origin of Friedreich's ataxia (FRDA) mutation predates divergence of Indian and Caucasian populations |
| 13/94 | G Padma (India) | Mitochondrial Gene Mutations as a cause of Non-Syndromic Hearing Impairment among Probands from Andhra Pradesh |
| 3. Genome Variation Diversity and Evolution | ||
| 14/109 | Doris Bachtrog (United States of America) | Evolutionary dynamics of the human Y chromosome |
| 15/147 | RS Ramesar (South Africa) | Genomic Studies on Indigenous African Populations |
| 16/124 | A Hidalgo-Miranda (Mexico) | The Mexican Genome Diversity Project: Analysis of genetic structure in Mestizo and Amerindian populations of Mexico |
| 17/159 | Vadim Stepanov (Russia) | Population history of North Eurasia revealed by X-chromosome ZFX haplotypes |
| 18/139 | Michael Nothnagel (Germany) | Population structure inference and genetic matching in European samples using genome-wide marker sets |
| 19/165 | Yumi Yamaguchi-Kabata (Japan) | Structure of Japanese population based on SNP genotypes from 7,003 individuals in comparison to other ethnic groups: Effects on population-based association studies |
| 4. Genomics of Microbial Pathogens and Host-Pathogen Interactions | ||
| 20/181 | Tun Kyaw (Japan) | Predicting Protein-Protein Interactions from metagenomics datasets |
| 21/196 | Sunny H Wong (United Kingdom) | Genetic polymorphisms in TLR1 are associated with susceptibility to leprosy |
| 22/197 | Amit Misra (India) | Genome-wide transcription analysis of interaction between the human macrophage and Mycobacterium tuberculosis during concurrent drug administration by conventional and novel methods |
| 23/166 | Niyaz Ahmed (India) | Genomic plasticity of Helicobacter pylori and impact on evolution of novel virulence mechanisms |
| 24/171 | Ashis Das (India) | Global gene expression analysis of P. vivax parasites causing severe malaria and interaction with the host genome |
| 25/189 | Susanta Roychoudhury (India) | Effect of IL1B Promoter Polymorphism on Down Regulation of Gastrin through Signalling Intermediates NFKB and SMAD7 |
| 5. Disease Proteomics | ||
| 26/201 | Raghothama Chaerkady (India) | Quantitative proteomic approaches to identify biomarkers for hepatocellular carcinoma |
| 27/216 | KS Rakesh (India) | Embryonic stem cells, their biomedical potential and proteomics approach for quality control |
| 28/219 | Amitabh Sharma (India) | Functional characterization of putative disease proteins in Type 2 Diabetes Mellitus |
| 29/220 | Yogeshwer Shukla (India) | Development of Novel Biomarkers for Breast Cancer in North Indian Population |
| 30/211 | Narasimhan Kothandaraman (Singapore) | Use of In-silico approaches to identify promoter elements and transcription factors associated with malignancy in ovarian cancer followed by validation of potential targets in tissues and serum samples of patients with ovarian cancer using proteomic approaches |
| 31/212 | Jesintha Maniraja (India) | BIOBASE Knowledge LibraryTM (BKL) Disease View and HGMD®: A comprehensive literature-derived disease information management system |
| 32/213 | Moutushy Mitra (India) | Methylation status of EpCAM in y79 retinoblastoma cell line: Proteomic analysis shows modification of various other proteins |
| 6. Computational Biology and Structural Proteomics | ||
| 33/236 | JE Loveland (United Kingdom) | High Quality Manual Genome Annotation at WTSI |
| 34/233 | Lalitha Guruprasad (India) | Identification and Analysis of Novel Repeats and Domains in Human proteome |
| 35/237 | Olena Morozova (Canada) | Defining expression signatures of known cancer genes using seriation analysis of SAGE libraries from Cancer Genome Anatomy Project (CGAP) |
| 36/230 | Moitrayee Bhattacharyya (India) | Structure-Function correlations in LuxS from bacteria: Analysis of protein-protein interface clusters by graph theoritical approach |
| 37/228 | Manju Bansal (India) | Intrinsic versus induced effects in DNA structure |
| 38/232 | Somnath Dutta (India) | Three-dimensional structure of Vibrio cholerae Hemolysin oligomer by Cryoelectron Microscopy |
| 7. Genomics of Complex Disorders I | ||
| 39/285 | Maris Laan (Estonia) | Genome-wide association study with blood pressure traits |
| 40/280 | Ashok Kumar (United States of America) | Physiological Effect of Human Angiotensinogen Haplotypes on Blood Pressure in Transgenic Mice |
| 41/322 | Fredrik O Vannberg (United Kingdom) | Genome wide study of tuberculosis susceptibility in West Africans reveal novel associations |
| 42/271 | Sylvia Hofmann (Germany) | A genome-wide association study identifies a novel sarcoidosis disease gene with potential relevance for related granulomatous inflammatory phenotypes |
| 43/253 | Murali D Bashyam (India) | The Cancer Genome: A-ray of hope |
| 44/287 | Thomas LaFramboise (United States of America) | Somatic DNA Amplification as a Phenotype in Cancer |
| 8. Epigenomics | ||
| 45/339 | Rakesh Mishra (India) | Nuclear matrix, genome organization and regulation of genes |
| 46/325 | Hiroyuki Aburatani (Japan) | Epigenomic regulation of p53 pathway |
| 47/337 | Sanjeev Khosla (India) | DNMT3L: epigenetic correlation with cancer |
| 48/335 | Roy Joseph (Singapore) | High throughput sequencing technologies revealed correlation of histone methylation pattern on estrogen response element utilization of binding sites in MCF-7 human breast cancer cell line |
| 49/331 | Deepti Deobagkar (India) | The DNA methylation profile of genes from the inactive X chromosome from human fibroblasts |
| 50/338 | Tapas Kundu (India) | Alteration of genome function by modulating epigenetic marks: Implication in diseases |
| 51/348 | Chia Lin Wei (Singapore) | Dynamics of genome organizations and epigenetic networks during pluripotent cell differentiation |
| 9. Pharmacogenomics and Toxicogenomics | ||
| 52/357 | Dylan M Glubb (New Zealand) | An Acute Antidepressant Pharmacogenomic Study and Association of ADM, a Paroxetine-Regulated Gene, with Antidepressant Response |
| 53/367 | Rama Devi Mittal (India) | Pharmacogenomic Study of Drug Transporter ABCB1 and CYP3A4*1B, CYP3A5*3 Polymorphisms associated with Daily Dose Requirement of Cyclosporine A to Prevent Renal Allograft Rejection in North India |
| 54/370 | A Poduri (India) | Polymorphisms in Statin Metabolism Pathway Genes Predict Statin Mediated LDL Cholesterol Lowering in Coronary Artery Disease Patients |
| 55/354 | Sujata De Chaudhuri (India) | Arsenic induced premature senescence: A biomarker study in exposed population from West Bengal, India |
| 56/364 | Ritushree Kukreti (India) | Pharmacogenomics and Predictive Therapy for Complex Diseases |
| 57/355 | Dipali Dhawan (India) | Genetic Variations in TCF7L2 Influence Therapeutic Response to Sulfonylureas in Indian Diabetics |
| 10. Genes Chromosomes and Disease | ||
| 58/442 | Motoji Sawabe (Japan) | Phenome scan (genotype/dense phenotype association studies) of a comprehensive clinicopathological database derived from large numbers of autopsy cases |
| 59/390 | Peh Yean Cheah (Singapore) | Genome Wide Search for Novel Cancer Gene in Familial Adenomatous Polyposis (FAP) Variant Patients without Detectable APC Mutation |
| 60/391 | Howard J Cooke (United Kingdom) | Modelling potential CNV effects on human fertility by manipulating meiosis in mice |
| 61/400 | Ilse Gijselinck (Belgium) | Identification of a novel chromosomal locus in a Belgian FTLD-MND family |
| 62/459 | Farah R Zahir (Canada) | Genotype-phenotype correlations for CNVs identified in patients with mental retardation; increased array resolution refines detected CNVs, selects candidate genes and diagnoses known syndromes |
| 63/399 | Jozef Gecz (Australia) | Systematic resequencing of the coding exons of the X chromosome in X-linked mental retardation |
| 11. Technology Developments and Applications | ||
| 64/472 | Subeer S Majumdar (India) | Keeping pace with the innovation: An easily adaptable technique for rapidly generating humanized animal models in the era of human genome |
| 65/468 | FCL Hyland (United States of America) | Human whole genome sequencing by high-throughput, short read oligonucleotide ligation |
| 66/473 | Mike Makrigiorgos (United States of America) | Replacing PCR with COLD-PCR enriches variant DNA sequences and redefines the sensitivity of genetic testing |
| 67/478 | Nalini Raghavachari (United States of America) | Characterization of whole blood gene expression profiles in sickle cell disease with enhanced transcript detection using globin mRNA reduction |
| 68/469 | Lauris Kaplinski (Estonia) | Evaluation of factors affecting the success of multiplex PCR |
| 69/471 | Christian Maercker (Germany) | A new assay in functional genomics: Monitoring cell differentiation in live cell chips by electric cell-substrate impedance sensing |
| 12. Genomics of Complex Disorders II | ||
| 70/488 | Koumudi Godbole (India) | Neural tube defects in India occur despite normal maternal folate status and low frequency of T allele at C677T polymorphism in the MTHFR gene |
| 71/491 | Anastasiya Kazantseva (Russia) | The influence of SLC6A3 and DRD2 genes variation on personality traits modified by gender - ethnicity confounding |
| 72/501 | Jharna Ray (India) | Molecular pathogenesis of Parkin gene related Parkinson's disease in Indian population |
| 73/510 | Ratnakar Tripathi (India) | PAX6 interacts with SPARC, Ras and P53 that links Akt and TGFbeta pathways and influences on neural functions in brain |
| 74/490 | Inderjeet Kaur (India) | Contributions of the ARMS2 (LOC387715) and HTRA1 Variants in the Risk of Age-Related Macular Degeneration Among Indian Patients |
| 75/486 | Sayak Ganguli (India) | In Silico analysis reveals Pyrroloquinoline quinine is an effective ligand for α - synuclein - a key player in Parkinson's disease |
| 13. Micro RNA and Non-Coding DNA and Repeats | ||
| 76/549 | Claes Wahlestedt (United States of America) | Noncoding RNAs in Nervous System Function |
| 77/540 | R Salowsky (Germany) | Quality control of miRNA in biological extractions |
| 78/532 | Satya Keerthi Kota (India) | Endogenous XIST complementary small RNA and RNAi machinery in human X dosage compensation |
| 79/538 | Beena Pillai (India) | Role of transcriptional dysregulation in polyglutamine mediated neuronal cell death |
| 80/531 | Chandrasekhar Kanduri (Sweden) | Mechanistic insights into Kcnq1ot1 non-coding antisense RNA-mediated transcriptional silencing of the chromosomal domains |
| 81/525 | S Ganesh (India) | The human satellite III non-coding RNA is involved in general stress response and modulates the cellular toxicity of misfolded proteins associated with neurodegenerative disorders |
| 14. Genomics of Model Organisms | ||
| 82/552 | Vani Brahmachari (India) | Mining the human genome for components of cellular memory modules |
| 83/555 | Debbie Goode (United Kingdom) | Investigating the influence of cis-regulatory elements in differential roles of the PAX258 gene family |
| 84/580 | Sridhar Sivasubbu (India) | Genome-wide gene trapping identifies novel transcripts in zebrafish |
| 85/556 | Bina Joe (United States of America) | Positional cloning identifies variants of A disintegrin-like metalloproteinase with thrombospondin motifs 16 linked to hypertension in a rat model and in humans |
| 86/565 | Thomas Lufkin (Singapore) | Cell-type specific transcriptional profiling in developing mouse embryos |
| 87/566 | Leslie A Lyons (United States of America) | Genetic Variation and Population Structuring of the Domestic Cat |
| 15. Chemical Genomics and Molecular Medicine | ||
| 88/590 | Tarun Chopra (India) | Novel paradigm in lipid metabolic network of Mycobacterium tuberculosis |
| 89/599 | M Prakesch (Canada) | A High-throughput Generation of Natural Product-Inspired Compounds: The Discovery of Chemical Modulators of Cell Death Pathways Involving Bcl-XL/Mcl-1 |
| 90/591 | Foster Gonsalves (United States of America) | Novel RNAi-based Chemical Genetic Screen to Identify Small Molecule Modulators of the Wnt/wg Signaling Pathway |
| 91/605 | Masoud Vedadi (Canada) | Application of Small Molecule Screening to Investigate Binding Specificity of Protein Families |
| 92/589 | Marek Bodzioch (Poland) | The effects of humanin peptides on mitochondrial functions and global gene expression |
| 93/588 | Jyoti Balhara (India) | S29 ribosomal protein regulates balance between cell death and survival in Hep2 cells through MAPK/mitochondrial pathway |
| 94/600 | Mart Saarma (Finland) | Novel neurotrophic factors for the treatment of neurodegenerative diseases |
